Citing Reactome

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This is a listing of 468 articles, 159 reviews, 174 books and other references citing Reactome Publications.

We also provide a list of publications, citing the use of Reactome pathway data to assist biologists, clinicians, geneticists and bioinformaticians to answer important biological questions.

If your publication cites one of the Reactome Publications and is not listed below, please let us know by sending an email to HelpDesk and we will update the list.


AHMED, J., MEINEL, T., DUNKEL, M., MURGUEITIO, M. S., ADAMS, R., BLASSE, C., ECKERT, A., PREISSNER, S. & PREISSNER, R. (2011) CancerResource: a comprehensive database of cancer-relevant proteins and compound interactions supported by experimental knowledge. Nucleic Acids Research, 39, 960-967.
ANDREINI, C., BERTINI, I., CAVALLARO, G., DECARIA, L. & ROSATO, A. (2011) A simple protocol for the comparative analysis of the structure and occurrence of biochemical pathways across superkingdoms. Journal of Chemical Information and Modeling, 51, 730-8.
BENSON, D. A., KARSCH-MIZRACHI, I., LIPMAN, D. J., OSTELL, J. & SAYERS, E. W. (2011) GenBank. Nucleic Acids Research, 39, 32-37.
BORDRON, P., EVEILLARD, D. & RUSU, I. (2011) SIPPER : A flexible method to integrate heterogeneous data into a metabolic network. Proceedings of Computational Advances in Bio and Medical Sciences (ICCABS).
BURKARD, T. R., PLANYAVSKY, M., KAUPE, I., BREITWIESER, F. P., BUERCKSTUEMMER, T., BENNETT, K. L., SUPERTI-FURGA, G. & COLINGE, J. (2011) Initial characterization of the human central proteome. BMC Systems Biology, 5, 17.
CAVILL, R., KAMBUROV, A., ELLIS, J. K., ATHERSUCH, T. J., BLAGROVE, M. S. C., HERWIG, R., EBBELS, T. M. D. & KEUN, H. C. (2011) Consensus-Phenotype Integration of Transcriptomic and Metabolomic Data Implies a Role for Metabolism in the Chemosensitivity of Tumour Cells. PLoS Computational Biology, 7, e1001113.
CERAMI, E. G., GROSS, B. E., DEMIR, E., RODCHENKOV, I., BABUR, O., ANWAR, N., SCHULTZ, N., BADER, G. D. & SANDER, C. (2011) Pathway Commons, a web resource for biological pathway data. Nucleic Acids Research, 39, 685-690.
CHAKRABORTY, C., ROY, S. S., HSU, M. J. & AGORAMOORTHY, G. (2011) Landscape mapping of functional proteins in insulin signal transduction and insulin resistance: a network-based protein-protein interaction analysis. PLoS one, 6, e16388.
CHAO, S.-Y., CHIANG, J.-H., HUANG, A.-M. & CHANG, W.-S. (2011) An integrative approach to identifying cancer chemoresistance-associated pathways. BMC Medical Genomics, 4, 23.
CHEN, C., HUANG, H. & WU, C. H. (2011) Protein Bioinformatics Databases and Resources. Methods in Molecular Biology, 694, 3.
COHEN, O., GOPHNA, U. & PUPKO, T. (2011) The complexity hypothesis revisited: connectivity rather than function constitutes a barrier to horizontal gene transfer. Molecular Biology and Evolution, 28, 1481-1489.
CUTTS, R. J., GADALETA, E., HAHN, S. A., CRNOGORAC-JURCEVIC, T., LEMOINE, N. R. & CHELALA, C. (2011) The Pancreatic Expression database: 2011 update. Nucleic Acids Research, 39, 1023-1028.
DAVIS, A. P., KING, B. L., MOCKUS, S., MURPHY, C. G., SARACENI-RICHARDS, C., ROSENSTEIN, M., WIEGERS, T. & MATTINGLY, C. J. (2011) The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Research, 1-6.
D'EUSTACHIO, P. (2011) Bioinformatics for Comparative Proteomics. Methods in Molecular Biology, 694, 49-61.
FUCILE, G., DI BIASE, D., NAHAL, H., LA, G., KHODABANDEH, S., CHEN, Y., EASLEY, K., CHRISTENDAT, D., KELLEY, L. & PROVART, N. J. (2011) ePlant and the 3D Data Display Initiative: Integrative Systems Biology on the World Wide Web. PLoS one, 6, e15237.
JONES, P. (2011) Analysing Proteomics Identifications in the Context of Functional and Structural Protein Annotation: Integrating Annotation Using PICR, DAS, and BioMart. Methods in Molecular Biology, 696, 107-121.
JØRGENSEN, K. M., HJELLE, S. M., OYE, O. K., PUNTERVOLL, P., REIKVAM, H., SKAVLAND, J., ANDERSSEN, E., BRUSERUD, O. & GJERTSEN, B. T. (2011) Untangling the intracellular signalling network in cancer - a strategy for data integration in acute myeloid leukaemia. Journal of Proteomics, 74, 269-281.
KAMBUROV, A., PENTCHEV, K., GALICKA, H., WIERLING, C., LEHRACH, H. & HERWIG, R. (2011) ConsensusPathDB: toward a more complete picture of cell biology. Nucleic Acids Research, 39, 712-717.
KARINEN, S., HEIKKINEN, T., NEVANLINNA, H. & HAUTANIEMI, S. (2011) Data Integration Workflow for Search of Disease Driving Genes and Genetic Variants. PLoS ONE, 6, e18636.
KARP, P. D. & CASPI, R. (2011) A survey of metabolic databases emphasizing the MetaCyc family. Archives of Toxicology.
KERRIGAN, J. J., XIE, Q., AMES, R. S. & LU, Q. (2011) Production of protein complexes via co-expression. Protein Expression and Purification, 75, 1-14.
KHATRI, P. & SARWAL, M. M. (2011) Immunologic Signatures of Rejection. Analysis, 239-256.
KIM, Y.-A., WUCHTY, S. & PRZYTYCKA, T. M. (2011) Identifying Causal Genes and Dysregulated Pathways in Complex Diseases. PLoS Computational Biology, 7, e1001095.
LASHER, C. D., RAJAGOPALAN, P. & MURALI, T. M. (2011) Discovering Networks of Perturbed Biological Processes in Hepatocyte Cultures. PLoS one, 6, e15247.
LATINO, D. (2011) Classification of chemical reactions and chemoinformatic processing of enzymatic transformations. Methods in Molecular Biology, 672, 325-340.
LEE, S., LEE, E., LEE, K. H. & LEE, D. (2011) Predicting disease phenotypes based on the molecular networks with condition-responsive correlation. International Journal of Data Mining and Bioinformatics, 5, 131-42.
LI, Q., LI, X., LI, C., CHEN, L., SONG, J., TANG, Y. & XU, X. (2011) A Network-Based Multi-Target Computational Estimation Scheme for Anticoagulant Activities of Compounds. PLoS one, 6, e14774.
LOURENÇO, A., CARNEIRO, S., ROCHA, M., FERREIRA, E. C. & ROCHA, I. (2011) Challenges in integrating Escherichia coli molecular biology data. Briefings in Bioinformatics, 12, 91-103.
MAGLOTT, D., OSTELL, J., PRUITT, K. D. & TATUSOVA, T. (2011) Entrez Gene: gene-centered information at NCBI. Nucleic Acids Research, 39, 52-57.
MAQUNGO, M., KAUR, M., KWOFIE, S. K., RADOVANOVIC, A., SCHAEFER, U., SCHMEIER, S., OPPON, E., CHRISTOFFELS, A. & BAJIC, V. B. (2011) DDPC: Dragon Database of Genes associated with Prostate Cancer. Nucleic Acids Research, 39, D980-5.
MEWES, H. W., RUEPP, A., THEIS, F., RATTEI, T., WALTER, M., FRISHMAN, D., SUHRE, K., SPANNAGL, M., MAYER, K. F. X., STÜMPFLEN, V. & ANTONOV, A. (2011) MIPS: curated databases and comprehensive secondary data resources in 2010. Nucleic Acids Research, 39, 220-224.
MILANOWSKA, K., KRWAWICZ, J., PAPAJ, G., KOSINSKI, J., POLESZAK, K., LESIAK, J., OSINSKA, E., ROTHER, K. & BUJNICKI, J. M. (2011) REPAIRtoire--a database of DNA repair pathways. Nucleic Acids Research, 39, 788-792.
MURALI, T., PACIFICO, S., YU, J., GUEST, S., ROBERTS, G. G. & FINLEY, R. L. (2011) DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. Nucleic Acids Research, 39, D736-43.
NATALE, D. A., ARIGHI, C. N., BARKER, W. C., BLAKE, J. A., BULT, C. J., CAUDY, M., DRABKIN, H. J., D'EUSTACHIO, P., EVSIKOV, A. V., HUANG, H., NCHOUTMBOUBE, J., ROBERTS, N. V., SMITH, B., ZHANG, J. & WU, C. H. (2011) The Protein Ontology: a structured representation of protein forms and complexes. Nucleic Acids Research, 39, 539-545.
PAZ, A., BROWNSTEIN, Z., BER, Y., BIALIK, S., DAVID, E., SAGIR, D., ULITSKY, I., ELKON, R., KIMCHI, A., AVRAHAM, K. B., SHILOH, Y. & SHAMIR, R. (2011) SPIKE: a database of highly curated human signaling pathways. Nucleic Acids Research, 39, D793-9.
PERLMAN, L., GOTTLIEB, A., ATIAS, N., RUPPIN, E. & SHARAN, R. (2011) Combining drug and gene similarity measures for drug-target elucidation. Journal of Computational Biology, 18, 133-45.
PETRI, V., SHIMOYAMA, M., HAYMAN, G. T., SMITH, J. R., TUTAJ, M., DE PONS, J., DWINELL, M. R., MUNZENMAIER, D. H., TWIGGER, S. N. & JACOB, H. J. (2011) The rat genome database pathway portal. Database, 2011, bar010.
ROSSIN, E. J., LAGE, K., RAYCHAUDHURI, S., XAVIER, R. J., TATAR, D., BENITA, Y., COTSAPAS, C. & DALY, M. J. (2011) Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology. PLoS Genetics, 7, e1001273.
SCHAEFER, U., SCHMEIER, S. & BAJIC, V. B. (2011) TcoF-DB: dragon database for human transcription co-factors and transcription factor interacting proteins. Nucleic Acids Research, 39, D106.
SHIRDEL, E. A., XIE, W., MAK, T. W. & JURISICA, I. (2011) NAViGaTing the Micronome – Using Multiple MicroRNA Prediction Databases to Identify Signalling Pathway-Associated MicroRNAs. PLoS one, 6, e17429.
SUCAET, Y. & DEVA, T. (2011) Evolution and applications of plant pathway resources and databases. Briefings in Bioinformatics.
SUN, J. & ZHAO, Z. (2011) A comparative study of cancer proteins in the human protein-protein interaction network. BMC Genomics, 11 Suppl 3, S5.
SZKLARCZYK, D., FRANCESCHINI, A., KUHN, M., SIMONOVIC, M., ROTH, A., MINGUEZ, P., DOERKS, T., STARK, M., MULLER, J., BORK, P., JENSEN, L. J. & MERING, C. V. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Research, 39, 561-568.
TABOUREAU, O., NIELSEN, S. K., AUDOUZE, K., WEINHOLD, N., EDSGÄRD, D., ROQUE, F. S., KOUSKOUMVEKAKI, I., BORA, A., CURPAN, R., JENSEN, T. S., BRUNAK, S. & OPREA, T. I. (2011) ChemProt: a disease chemical biology database. Nucleic Acids Research, 39, 367-372.
TROPSHA, A., OPREA, T. I., MAY, E. E. & LEITA, A. (2011) Chemoinformatics and Computational Chemical Biology. Methods in Molecular Biology, 672.
VELANKAR, S. & KLEYWEGT, G. J. (2011) The Protein Data Bank in Europe (PDBe): bringing structure to biology. Acta Crystallographica Section D Biological Crystallography, 67, 324-330.
VIZCAÍNO, J. A., REISINGER, F. & CÔTÉ, R. (2011) Data Mining in Proteomics. Methods in Molecular Biology, 696, 93-105.
WANG, Z., ZHANG, X.-C., LE, M. H., XU, D., STACEY, G. & CHENG, J. (2011) A protein domain co-occurrence network approach for predicting protein function and inferring species phylogeny. PLoS One, 6, e17906.
WEBB, R. L. & MA'AYAN, A. (2011) Sig2BioPAX: Java tool for converting flat files to BioPAX Level 3 format. Source Code for Biology and Medicine, 6, 5.
XU, Y., HU, W., CHANG, Z., DUANMU, H., ZHANG, S., LI, Z., LI, Z., YU, L. & LI, X. (2011) Prediction of human protein-protein interaction by a mixed Bayesian model and its application to exploring underlying cancer-related pathway crosstalk. Interface, 8, 555-67.
YAKHINI, Z. & JURISICA, I. (2011) Cancer Computational Biology. BMC Bioinformatics, 12, 120.
YANG, X., YE, Y., WANG, G., HUANG, H., YU, D. & LIANG, S. (2011) VeryGene: linking tissue-specific genes to diseases, drugs, and beyond for knowledge discovery. Physiological Genomics, 43, 457-60.
ZHANG, G. L., DELUCA, D. S. & BRUSIC, V. (2011) Protein Microarray for Disease Analysis. Methods in Molecular Biology, 723.
ZHANG, K. X. & OUELLETTE, B. F. F. (2011) CAERUS: Predicting CAncER oUtcomeS Using Relationship between Protein Structural Information, Protein Networks, Gene Expression Data, and Mutation Data. PLoS Computational Biology, 7, e1001114.
ZHAO, Z., XIA, J., TASTAN, O., SINGH, I., KSHIRSAGAR, M., CARBONELL, J. & KLEIN-SEETHARAMAN, J. (2011) Virus interactions with human signal transduction pathways. International Journal of Computational Biology and Drug Design, 4, 83-105.


ALEXOPOULOS, L. G., MELAS, I. N., CHAIRAKAKI, A. D., SAEZ-RODRIGUEZ, J. & MITSOS, A. (2010) Construction of signaling pathways and identification of drug effects on the liver cancer cell HepG2. Proceedings of 32nd Annual International Conference of the IEEE EMBS.
ALEXOPOULOS, L. G., SAEZ-RODRIGUEZ, J., COSGROVE, B. D., LAUFFENBURGER, D. A. & SORGER, P. K. (2010) Networks Inferred from Biochemical Data Reveal Profound Differences in Toll-like Receptor and Inflammatory Signaling between Normal and Transformed Hepatocytes. Molecular and Cellular Proteomics, 9, 1849-65.
ALIFERIS, K. A. & CHRYSAYI-TOKOUSBALIDES, M. (2010) Metabolomics in pesticide research and development: review and future perspectives. Metabolomics, 7, 35-53.
ANATSKAYA, O. V. & VINOGRADOV, A. E. (2010) Somatic polyploidy promotes cell function under stress and energy depletion: evidence from tissue-specific mammal transcriptome. Functional and Integrative Genomics, 433-446.
ANDERSON, M. W. & SCHRIJVER, I. (2010) Next Generation DNA Sequencing and the Future of Genomic Medicine. Genes, 1, 38-69.
ANTONELL, A., VILARDELL, M. & PÉREZ JURADO, L. A. (2010) Transcriptome profile in Williams-Beuren syndrome lymphoblast cells reveals gene pathways implicated in glucose intolerance and visuospatial construction deficits. Human Genetics, 128, 27-37.
ANTONOV, A. V. (2010) Mining protein lists from proteomics studies: applications for drug discovery. Expert Opinion on Drug Discovery, 5, 323-331.
ANTONOV, A. V., SCHMIDT, E. E., DIETMANN, S., KRESTYANINOVA, M. & HERMJAKOB, H. (2010) R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases. Nucleic Acids Research, 38, W78-83.
ARAB, S., SADEGHI, M., ESLAHCHI, C., PEZESHK, H. & SHEARI, A. (2010) A pairwise residue contact area-based mean force potential for discrimination of native protein structure. BMC Bioinformatics, 11, 16.
ARANDA, B., ACHUTHAN, P., ALAM-FARUQUE, Y., ARMEAN, I., BRIDGE, A., DEROW, C., FEUERMANN, M., GHANBARIAN, A. T., KERRIEN, S., KHADAKE, J., KERSSEMAKERS, J., LEROY, C., MENDEN, M., MICHAUT, M., MONTECCHI-PALAZZI, L., NEUHAUSER, S. N., ORCHARD, S., PERREAU, V., ROECHERT, B., VAN EIJK, K. & HERMJAKOB, H. (2010) The IntAct molecular interaction database in 2010. Nucleic Acids Research, 38, D525-31.
BABUR, O., DOGRUSOZ, U., DEMIR, E. & SANDER, C. (2010) ChiBE: interactive visualization and manipulation of BioPAX pathway models. Bioinformatics, 26, 429-31.
BAUDOT, A., DE LA TORRE, V. & VALENCIA, A. (2010) Mutated genes, pathways and processes in tumours. EMBO Reports, 11, 6-11.
BERGER, S. I., MA'AYAN, A. & IYENGAR, R. (2010) Systems pharmacology of arrhythmias. Science Signaling, 3, ra30.
BESTEIRO, S., VO DUY, S., PERIGAUD, C., LEFEBVRE-TOURNIER, I. & VIAL, H. J. (2010) Exploring metabolomic approaches to analyse phospholipid biosynthetic pathways in Plasmodium. Parasitology, 137, 1343-56.
BLINOV, M. L., RUEBENACKER, O., SCHAFF, J. C. & MORARU, I. I. (2010) Modeling without Borders: Creating and Annotating VCell Models Using the Web. Proceedings of 6th International Symposium, ISBRA.
BROOKSBANK, C., CAMERON, G. & THORNTON, J. (2010) The European Bioinformatics Institute's data resources. Nucleic Acids Research, 38, D17-25.
BUDCZIES, J., DENKERT, C., MÜLLER, B. M. & BROCKMÖLLER, S. F. (2010) METAtarget – extracting key enzymes of metabolic regulation from high-throughput metabolomics data using KEGG REACTION information. Lecture Notes in Informatics, 103-112.
CAKMAK, A., DSOUZA, A., HANSON, R. W. & OZSOYOGLU, M. (2010) Analyzing metabolite measurements for automated prediction of underlying biological mechanisms. Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology - BCB '10. New York, New York, USA, ACM Press.
CAKMAK, A., OZSOYOGLU, G. & HANSON, R. W. (2010) Querying Metabolism Under Different Physiological Constraints. Journal of Bioinformatics and Computational Biology, 08, 247.
CAMPBELL, S. J., GAULTON, A., MARSHALL, J., BICHKO, D., MARTIN, S., BROUWER, C. & HARLAND, L. (2010) Visualizing the drug target landscape. Drug Discovery Today, 15, 3-15.
CEOL, A., CHATR ARYAMONTRI, A., LICATA, L., PELUSO, D., BRIGANTI, L., PERFETTO, L., CASTAGNOLI, L. & CESARENI, G. (2010) MINT, the molecular interaction database: 2009 update. Nucleic Acids Research, 38, D532-9.
CHARRO, N., HOOD, B. L., FARIA, D., PACHECO, P., AZEVEDO, P., LOPES, C., DE ALMEIDA, A. B., COUTO, F. M., CONRADS, T. P. & PENQUE, D. (2010) Serum proteomics signature of Cystic Fibrosis patients: A complementary 2-DE and LC-MS/MS approach. Journal of Proteomics, 74, 110-126.
CHAURASIA, G. & FUTSCHIK, M. E. (2010) Interactomics and Cancer. An Omics Perspective on Cancer Research, 167-182.
CHEN, H. & XIE, G. (2010) The use of web ontology languages and other semantic web tools in drug discovery. Expert Opinion on Drug Discovery, 5, 413-423.
CHEN, S., YANG, P., JIANG, F., WEI, Y., MA, Z. & KANG, L. (2010) De Novo Analysis of Transcriptome Dynamics in the Migratory Locust during the Development of Phase Traits. PLoS One, 5, e15633.
CHESLER, E. J. & BAKER, E. J. (2010) The importance of open-source integrative genomics to drug discovery. Current opinion in Drug Discovery & Development, 13, 310-6.
CHIA, N.-Y., CHAN, Y.-S., FENG, B., LU, X., ORLOV, Y. L., MOREAU, D., KUMAR, P., YANG, L., JIANG, J., LAU, M.-S., HUSS, M., SOH, B.-S., KRAUS, P., LI, P., LUFKIN, T., LIM, B., CLARKE, N. D., BARD, F. & NG, H.-H. (2010) A genome-wide RNAi screen reveals determinants of human embryonic stem cell identity. Nature, 468, 316-320.
COTTRET, L. & JOURDAN, F. (2010) Graph methods for the investigation of metabolic networks in parasitology. Parasitology, 1-15.
DAEMEN, A., SIGNORETTO, M., GEVAERT, O., SUYKENS, J. A. K. & DE MOOR, B. (2010) Improved microarray-based decision support with graph encoded interactome data. PLoS one, 5, e10225.
DAIGLE, B. J., SRINIVASAN, B. S., FLANNICK, J. A., NOVAK, A. F. & BATZOGLOU, S. (2010) Systems Biology for Signaling Networks. Systems Biology.
DALE, J. M., POPESCU, L. & KARP, P. D. (2010) Machine learning methods for metabolic pathway prediction. BMC Bioinformatics, 11, 15.
DALL'OLIO, G. M., BERTRANPETIT, J. & LAAYOUNI, H. (2010) The annotation and the usage of scientific databases could be improved with public issue tracker software. Database, 2010, baq035-baq035.
DANIELS, C., GODOY, P., DUQUE, E., MOLINA-HENARES, M. A., DE LA TORRE, J., DEL ARCO, J. M., HERRERA, C., SEGURA, A., GUAZZARONI, M. E., FERRER, M. & RAMOS, J. L. (2010) Global regulation of food supply by Pseudomonas putida DOT-T1E. Journal of Bacteriology, 192, 2169-81.
DE BRUIN, J. & KOK, J. (2010) Combining subgroup discovery and permutation testing to reduce reduncancy. Proceedings of the 4th International Conference on Leveraging applications of formal methods, verification, and validation. Springer.
DE MATOS, P., ALCÁNTARA, R., DEKKER, A., ENNIS, M., HASTINGS, J., HAUG, K., SPITERI, I., TURNER, S. & STEINBECK, C. (2010) Chemical Entities of Biological Interest: an update. Nucleic Acids Research, 38, D249-54.
DEL SOL, A., BALLING, R., HOOD, L. & GALAS, D. (2010) Diseases as network perturbations. Current Opinion in Biotechnology, 21, 566-571.
DELISI, C., FAN, Y., KIM, S., KON, M. & LOUISE, R. (2010) Regularization Techniques for Machine Learning on Graphs and Networks with Biological Applications. Communications in Mathematical Analysis, 8, 136-145.
DEY, S. K. & JAMIL, H. (2010) A hierarchical approach to reachability query answering in very large graph databases. Proceedings of the 19th ACM international conference on Information and knowledge management. ACM.
DILEK, A., BELVIRANLI, M. E. & DOGRUSOZ, U. (2010) VISIBIOweb: visualization and layout services for BioPAX pathway models. Nucleic Acids Research, 38, W150-4.
DODERER, M. S., YOON, K. & ROBBINS, K. A. (2010) SIDEKICK: Genomic data driven analysis and decision-making framework. BMC Bioinformatics, 11, 611.
DYER, M. D., NEFF, C., DUFFORD, M., RIVERA, C. G., SHATTUCK, D., BASSAGANYA-RIERA, J., MURALI, T. M. & SOBRAL, B. W. (2010) The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis. PLoS one, 5, e12089.
EASTON, J. M., HARRIS, L. M., VIANT, M. R., PEET, A. C. & ARVANITIS, T. N. (2010) Linked metabolites: a tool for the construction of directed metabolic graphs. Computers in Biology and Medicine, 40, 340-9.
EMIG, D., SALOMONIS, N., BAUMBACH, J., LENGAUER, T., CONKLIN, B. R. & ALBRECHT, M. (2010) AltAnalyze and DomainGraph: analyzing and visualizing exon expression data. Nucleic Acids Research, 38 Suppl, W755-62.
FANG, H., YANG, Y., LI, C., FU, S., YANG, Z., JIN, G., WANG, K., ZHANG, J. & JIN, Y. (2010) Transcriptome analysis of early organogenesis in human embryos. Developmental Cell, 19, 174-84.
FERREIRA, G. B., MATHIEU, C. & OVERBERGH, L. (2010) Understanding dendritic cell biology and its role in immunological disorders through proteomic profiling. Proteomics Clin Appl, 4, 190-203.
FOKKENS, L., BOTELHO, S. M. C., BOEKHORST, J. & SNEL, B. (2010) Enrichment of homologs in insignificant BLAST hits by co-complex network alignment. BMC Bioinformatics, 11, 86.
FREEMAN, T. C. (2010) Systems Biology for Signaling Networks. Systems Biology, 139-157.
FREEMAN, T. C., RAZA, S., THEOCHARIDIS, A. & GHAZAL, P. (2010) The mEPN scheme: an intuitive and flexible graphical system for rendering biological pathways. BMC Systems Biology, 4, 65.
FROLKIS, A., KNOX, C., LIM, E., JEWISON, T., LAW, V., HAU, D. D., LIU, P., GAUTAM, B., LY, S., GUO, A. C., XIA, J., LIANG, Y., SHRIVASTAVA, S. & WISHART, D. S. (2010) SMPDB: The Small Molecule Pathway Database. Nucleic Acids Research, 38, D480-7.
GADALETA, E., LEMOINE, N. R. & CHELALA, C. (2010) Online resources of cancer data: barriers, benefits and lessons. Briefings in Bioinformatics, 12, 52-63.
GARCIA-GARCIA, J., GUNEY, E., ARAGUES, R., PLANAS-IGLESIAS, J. & OLIVA, B. (2010) Biana: a software framework for compiling biological interactions and analyzing networks. BMC Bioinformatics, 11, 56.
GEER, L. Y., MARCHLER-BAUER, A., GEER, R. C., HAN, L., HE, J., HE, S., LIU, C., SHI, W. & BRYANT, S. H. (2010) The NCBI BioSystems database. Nucleic Acids Research, 38, D492-6.
GEHLENBORG, N., O'DONOGHUE, S. I., BALIGA, N. S., GOESMANN, A., HIBBS, M. A., KITANO, H., KOHLBACHER, O., NEUWEGER, H., SCHNEIDER, R., TENENBAUM, D. & GAVIN, A.-C. (2010) Visualization of omics data for systems biology. Nature Methods, 7, S56-68.
GILLE, C., BÖLLING, C., HOPPE, A., BULIK, S., HOFFMANN, S., HÜBNER, K., KARLSTÄDT, A., GANESHAN, R., KÖNIG, M., ROTHER, K., WEIDLICH, M., BEHRE, J. & HOLZHÜTTER, H.-G. (2010) HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology. Molecular Systems Biology, 6, 411.
GILLESPIE, M., SHAMOVSKY, V. & D'EUSTACHIO, P. (2010) Human and chicken TLR pathways: manual curation and computer-based orthology analysis. Mammalian Genome, 130-138.
GLAAB, E., BAUDOT, A., KRASNOGOR, N. & VALENCIA, A. (2010) Extending pathways and processes using molecular interaction networks to analyse cancer genome data. BMC Bioinformatics, 11, 597.
GLAAB, E., GARIBALDI, J. M. & KRASNOGOR, N. (2010) Learning pathway-based decision rules to classify microarray cancer samples. Lecture Notes in Informatics, 123-134.
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Applied bioinformatics: an introduction Paul M. Selzer, Richard J. Marhí_fer, Andreas Rohwer ISBN:354072799X
Data Integration in the Life Sciences: 4th international workshop, DILS 2007, Philadelphia, PA, USA, June 27-29, 2007 : proceedings Sarah Cohen-Boulakia, Val Tannen ISBN:3540732543
Advances in conceptual modeling: foundations and applications : ER 2007 workshops CMLSA, FP-UML, ONISW, QoIS, RIGiM, SeCoGIS, Auckland, New Zealand, November 5-9, 2007 : proceedings Jean-Luc Hainaut, Elke Al. Rundensteiner ISBN:3540762914
Membrane computing: 8th international workshop, WMC 2007, Thessaloniki, Greece, June 25-28, 2007 : revised, selected and invited papers George Eleftherakis, Petros Kefalas, Gheorghe Paun ISBN:3540773118
Bioinformatics and systems biology: collaborative research and resources Frederick B. Marcus ISBN:3540783520
Database and expert systems applications: 19th international conference, DEXA 2008, Turin, Italy, September 1-5, 2008 : proceedings Sourav S. Bhowmick ISBN:3540856536
Reasoning Web: 4th International Summer School 2008, Venice Italy, September 7-11, 2008, Tutorial Lectures Cristina Baroglio ISBN:3540856560
Pattern recognition in bioinformatics: third IAPR international conference, PRIB 2008, Melbourne, Australia, October 15-17, 2008 : proceedings Madhu Chetty, Alioune Ngom, Shandar Ahmad ISBN:3540884343
Bayesian Network Analysis Software Miroslawa Utzka ISBN:3639017498
BN++: A Biological Information System Jan Kuntzer ISBN:3639032837
Physiology and Genetics: Selected Basic and Applied Aspects Timm Anke, Daniela Weber ISBN:3642002854
Biomedical Data and Applications Amandeep S. Sidhu, Tharam Dillon, Matthew Bellgard ISBN:3642021921
Distributed Computing, Artificial Intelligence, Bioinformatics, Soft Computing, and Ambient Assisted Living Miguel P. Rocha ISBN:3642024807
Data Integration in the Life Sciences: 6th International Workshop, DILS 2009, Manchester, UK, July 20-22, 2009, Proceedings Norman W. Paton, Paolo Missier, Cornelia Hedeler ISBN:3642028780
Advances in Bioinformatics and Computational Biology: 4th Brazilian Symposium on Bioinformatics, BSB 2009, Porto Alegre, Brazil, July 29-31, 2009, Proceedings Katia S. Guimaraes, Anna Panchenko, Teresa Przytycka ISBN:3642032222
Semantic Techniques for the Web: The REWERSE Perspective Franícois Bry, Jan Maluszynski ISBN:3642045804
Metadata and Semantic Research: Third International Conference, MTSR 2009, Milan, Italy, October 1-2, 2009. Proceedings Miguel-Angel Sicilia, Nikos Manouselis ISBN:3642045898
Knowledge-Based Intelligent Information and Engineering Systems: 13th International Conference, KES 2009, Santiago, Chile, September 28-30, 2009, Proceedings Sebastian A. Ríos, Robert J. Howlett ISBN:364204591X
Discovery Science: 12th International Conference, DS 2009, Porto, Portugal, October 3-5 2009 Joao Gama ISBN:3642047467
Flexible Query Answering Systems: 8th International Conference, FQAS 2009, Roskilde, Denmark, October 26-28, 2009, Proceedings Troels Andreasen, Ronald R. Yager, Henrik Bulskov ISBN:3642049567
Trends in Practical Applications of Agents and Multiagent Systems: 8th International Conference on Practical Applications of Agents and Multiagent Systems Pawel Pawlewski, Vicente J Julian, Florentino Ferníçndez-Riverola ISBN:3642124321
Bioinformatics Research and Applications: 6th International Symposium, ISBRA 2010, Storrs, CT, USA, May 23-26, 2010. Proceedings Mark Borodovsky, Johann Peter Gogarten, Teresa Przytycka, Sanguthevar Rajasekaran ISBN:3642130771
Advances in Bioinformatics: 4th International Workshop on Practical Applications of Computational Biology and Bioinformatics 2010 (IWPACBB 2010) Miguel P. Rocha, Florentino Ferníçndez Riverola, Hagit Shatkay ISBN:3642132138
The Semantic Web: Research and Applications: 7th European Semantic Web Conference, ESWC 2010 Lora Aroyo ISBN:3642134882
Biosystems Engineering I: Creating Superior Biocatalysts Christoph Wittmann ISBN:3642142303
Case-Based Reasoning: 18th International Conference, ICCBR 2010, Alessandria, Italy, July 19-22, 2010 Proceedings Isabelle Bichindaritz ISBN:3642142737
Information, Technology in Bio- and Medical Informatics, ITBAM 2010: First International Conference Sami Khuri ISBN:3642150195
Leveraging Applications of Formal Methods, Verification, and Validation: 4th International Symposium on Leveraging Applications, Isola 2010 Tiziana Margaria, Bernhard Steffen ISBN:3642165575
Kernel-based Data Fusion for Machine Learning: Methods and Applications in Bioinformatics and Text Mining Shi Yu, Leon-Charles Tranchevent, Bart Moor, Yves Moreau ISBN:3642194052
Database Systems for Advanced Applications: 16th International Conference, DASFAA 2011, Hong Kong, China, April 22-25, 2011, Proceedings Jeffrey Xu Yu, Myoung Ho Kim, Rainer Unland ISBN:3642201482
Bioinformatics Research and Application: 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011, Proceedings Jianer Chen, Jianxin Wang, Alexander Zelikovsky ISBN:364221259X
Biowissenschaftlich recherchieren: íìber den Einsatz von Datenbanken und anderen Ressourcen der Bioinformatik Nicola Gaedeke ISBN:3764385251
Avian genomics in evolution, agriculture and health Jacqueline Smith, Indrajit Nanda ISBN:3805583389
Bioinformatics and computational biology solutions using R and Bioconductor Robert Gentleman ISBN:387251464
Semantic web: revolutionizing knowledge discovery in the life sciences Christopher J. O. Baker, Kei-Hoi Cheung ISBN:387484361
Cancer informatics in the post genomic era: toward information-based medicine Igor Jurisica, Dennis Wigle ISBN:387693203
Human blood plasma proteins: structure and function Johann Schaller, Simon Gerber, Urs Kaempfer ISBN:470016744
Analysis of biological networks Bjorn H. Junker, Falk Schreiber ISBN:470041447
Bioinformatics and functional genomics Jonathan Pevsner ISBN:470085851
Pathway analysis for drug discovery: computational infrastructure and applications Anton Yuryev ISBN:470107057
Machine learning in bioinformatics Yan-Qing Zhang, Jagath Chandana Rajapakse ISBN:470116625
Elements of Computational Systems Biology Huma M. Lodhi, Stephen H. Muggleton ISBN:470180935
Drug Efficacy, Safety, and Biologics Discovery: Emerging Technologies and Tools Sean Ekins, Jinghai J. Xu ISBN:470225556
Applications of Toxicogenomics in Safety Evaluation and Risk Assessment Darrell R. Boverhof, B. Bhaskar Gollapudi ISBN:470449829
Platelet Proteomics: Principles, Analysis, and Applications Angel Garcia-Alonso, Yotis Senis ISBN:470463376
Wiley encyclopedia of chemical biology Tadhg P. Begley ISBN:470470194
Advances in Chemical Physics Stuart A. Rice ISBN:470500255
Computational methods for mass spectrometry proteomics Ingvar Eidhammer ISBN:470512970
Batch Effects and Noise in Microarray Experiments: Sources and Solutions Andreas Scherer ISBN:470741384
Knowledge-Based Bioinformatics: From Analysis to Interpretation Gil Alterovitz, Marco Ramoni ISBN:470748311
Encyclopedia of genetics, genomics, proteomics, and bioinformatics: 8 volume set Lynn B. Jorde ISBN:470849746
Drug Discovery and Development: Drug discovery Mukund Shankar Chorghade ISBN:471398489
Aligning biological networks Andrew McKim ISBN:494497076
An introduction to genetic engineering Desmond S. T. Nicholl ISBN:521615216
Statistical mechanical approaches to informatics: Discovering motifs and clustering data David Anthony Hendrix, University of California, Berkeley ISBN:549168311
Semantic tuple space coordination for the Semantic Web with applications in life science Peishen Qi, Yale University ISBN:549372997
Beautiful Data: The Stories Behind Elegant Data Solutions Toby Segaran, Jeff Hammerbacher ISBN:596157118
因特网信息资源检索与利用 符绍宏 ISBN:7302114595
CompLife 2007: 3rd International Symposium on Computational Life Science, Utrecht, The Netherlands, 4-5 October 2007 Arno Siebes, Michael R. Berthold ISBN:735404526
Science in medicine: the JCI textbook of molecular medicine Andrew R. Marks, Ushma S. Neill ISBN:763750832
Semantic Web - Concepts and Applications B. Ravi Kumar Jain ISBN:8131411672
Nutrigenomics and proteomics in health and disease: food factors and gene interactions Yoshinori Mine, Kazuo Miyashita, Fereidoon Shahidi ISBN:813800331
Bioinformatics Prof. Vinay Sharma ISBN:8171339174
New therapeutic agents in thrombosis and thrombolysis Arthur Asao Sasahara, Joseph Loscalzo ISBN:824707958
Using the pharmaceutical literature Sharon Srodin ISBN:824729668
Genetic variation: a laboratory manual Michael P. Weiner ISBN:879697806
Genomes: perspectives from the 10th anniversary issue of Genome research Hillary E. Sussman, Maria Ann Smith ISBN:879698071
Plant hormone protocols Jeremy A. Roberts ISBN:896035778
An Omics Perspective on Cancer Research William C. S. Cho ISBN:9048126746
From fundamental genomics to systems biology: understanding the book of life Christina Kyriakopoulou ISBN:9279080040
Advanced Simulation and Verification of Electronic and Biological Systems Peng Li ISBN:9400701489
Biocomputing 2006: Proceedings of the Pacific Symposium; Hawaii, USA - 3-7 January 2006 Russ Altman, Russ B. Altman ISBN:9812564632
Pacific Symposium on Biocomputing 2007: Maui, Hawaii, 3-7 January 2007 Russ B. Altman, A. Keith Dunker, Lawrence Hunter ISBN:9812704175
Quantitative medical data analysis using mathematical tools and statistical techniques Don Hong, Yu Shyr ISBN:9812704612
Biological networks Francois Kepes ISBN:981270695X
Clustering challenges in biological networks W. Art Chaovalitwongse ISBN:9812771654
Biodata mining and visualization: novel approaches Ilkka Havukkala ISBN:9812790365
Pacific Symposium on Biocomputing 2009: Kohala Coast, Hawaii, USA, 5-9 January 2009 Russ B. Altman, A. Keith Dunker, Lawrence Hunter ISBN:9812836926