Welcome to the Reactome Wiki User Documentation space. Documents in this area are here to help the user get started. The pinacle document to date is the Reactome user guide, with videos being added on a regular basis.

User's Guide

One of our most valuable user documents is the Reactome User's Guide. Please look through the guide and let us know if our guide needs something new.

List of Abbreviations

The abbreviations used for small molecules in Reactome are available here.

Video Tutorials

The Reactome Team has begun producing a series of video user tutorials. Each video is user focused, designed to help new and experienced users get the most out of Reactome resources. Timely updates will be posted to the series touching upon all of the available tools.

The series is available here

PSI-MITAB Interactions

Our PSI-MITAB Interactions Document details Reactome's implementation of the HUPO Proteomics Standards Initiative (PSI)using the MITAB tab delimited data exchange format.

Reactome FI Cytoscape Plugin

Reactome Functional Interaction (FI) Cytoscape Plugin was designed to find network patterns related to cancer and other types of diseases. For an example how we use Reactome FIs for cancer data analysis, please see our publication. For details on how to use this Cytoscape plugin, please see Reactome FI Cytoscape Plugin.